1 HisKA#1
323-389 aa · 67 aa · 8.0% of protein
Raw token
HisKA:323:2.94e-17:389:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS13355
Histidine kinase, Hybrid
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeHybridLength833 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003481925#DXB00_RS13355Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length833 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 833 aa (49.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa833 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
436-554 aa · 119 aa · 14.3% of protein
Raw token
HATPase_c:436:8.17e-29:554:119:1093 Response_reg#3
573-684 aa · 112 aa · 13.4% of protein
Raw token
Response_reg:573:4.11e-17:684:112:1114 Response_reg#4
712-828 aa · 117 aa · 14.0% of protein
Raw token
Response_reg:712:3.06e-34:828:117:111- Raw architecture: HisKA:323:2.94e-17:389:67:64#HATPase_c:436:8.17e-29:554:119:109#Response_reg:573:4.11e-17:684:112:111#Response_reg:712:3.06e-34:828:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003481925::NZ_QUMC01000029.1::G00023
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span27270-32169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_13360RefSeq proteinWP_243107234.1
Context group ID
GCF_003481925::NZ_QUMC01000029.1::G00023Context members
DXB00_RS13355DXB00_RS13360DXB00_RS13365
Partner locus tags
DXB00_RS13355DXB00_RS13360DXB00_RS13365
Partner old locus tags
DXB00_13360DXB00_13365DXB00_13370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243107234.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS13355Primary locus identifier stored in the genes table.
Old locus tagDXB00_13360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000029.1Sequence record reported by the local genomic context database.
Genomic interval27 270-29 771 nt2 502 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 270-32 169 ntGCF_003481925::NZ_QUMC01000029.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000029.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000029.1All displayed genes belong to this local TCS context.
Neighborhood span27 270-32 169 nt4 900 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 270 nt32 169 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXB00_RS13355GCF_003481925#DXB00_RS13355
HKHybridCurrent focus
27 270-29 771 nt · Forward (+)
DXB00_RS13360GCF_003481925#DXB00_RS13360
HKClassic
29 978-31 450 nt · Forward (+)
DXB00_RS13365GCF_003481925#DXB00_RS13365
RRunclassified
31 444-32 169 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS13355The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0515846
Simplified PFAM architecture for HKOC_0515846
PFAM domain coverage: 414 / 833 aa (49.7%)
1 aa833 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[323-389] | HATPase_c[437-553] | Response_reg[573-686] | Response_reg[712-827]
- Domain count: 4
- Matched identifier: HKOC_0515846
- Positioned domains: HisKA 323-389 ; HATPase_c 437-553 ; Response_reg 573-686 ; Response_reg 712-827
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS13355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key