1 Response_reg#1
4-111 aa · 108 aa · 45.4% of protein
Raw token
Response_reg:4:0.00000000000000921:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS11975
Response regulator LytTR family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS11975Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 238 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-226 aa · 86 aa · 36.1% of protein
Raw token
LytTR:141:7.05e-19:226:92:98- Raw architecture: Response_reg:4:0.00000000000000921:111:111:111#LytTR:141:7.05e-19:226:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000024.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1675-2391Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_11980RefSeq proteinWP_118729141.1
Context group ID
GCF_003481925::NZ_QUMC01000024.1::G00018Context members
DXB00_RS11975
Partner locus tags
DXB00_RS11975
Partner old locus tags
DXB00_11980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729141.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS11975Primary locus identifier stored in the genes table.
Old locus tagDXB00_11980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000024.1Sequence record reported by the local genomic context database.
Genomic interval1 675-2 391 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 675-2 391 ntGCF_003481925::NZ_QUMC01000024.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000024.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000024.1All displayed genes belong to this local TCS context.
Neighborhood span1 675-2 391 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 675 nt2 391 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS11975GCF_003481925#DXB00_RS11975
RRLytTRCurrent focus
1 675-2 391 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940482
Simplified PFAM architecture for RROC_0940482
PFAM domain coverage: 200 / 238 aa (84.0%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_0940482
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key