1 HisKA#1
131-197 aa · 67 aa · 18.7% of protein
Raw token
HisKA:131:0.00000000000000631:197:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS08945
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS08945Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 359 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-351 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:241:1.82e-27:351:112:109- Raw architecture: HisKA:131:0.00000000000000631:197:67:64#HATPase_c:241:1.82e-27:351:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3008-4797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_08950RefSeq proteinWP_118730301.1
Context group ID
GCF_003481925::NZ_QUMC01000015.1::G00013Context members
DXB00_RS08940DXB00_RS08945
Partner locus tags
DXB00_RS08940DXB00_RS08945
Partner old locus tags
DXB00_08945DXB00_08950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118730301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS08945Primary locus identifier stored in the genes table.
Old locus tagDXB00_08950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000015.1Sequence record reported by the local genomic context database.
Genomic interval3 718-4 797 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 008-4 797 ntGCF_003481925::NZ_QUMC01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000015.1All displayed genes belong to this local TCS context.
Neighborhood span3 008-4 797 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 008 nt4 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS08940GCF_003481925#DXB00_RS08940
RROmpR
3 008-3 721 nt · Reverse (-)
DXB00_RS08945GCF_003481925#DXB00_RS08945
HKClassicCurrent focus
3 718-4 797 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS13730Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2754332
Simplified PFAM architecture for HKOC_2754332
PFAM domain coverage: 277 / 359 aa (77.2%)
1 aa359 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[20-121] | HisKA[132-196] | HATPase_c[242-351]
- Domain count: 3
- Matched identifier: HKOC_2754332
- Positioned domains: DUF4118 20-121 ; HisKA 132-196 ; HATPase_c 242-351
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS13730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key