1 Response_reg#1
7-116 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:7:1.74e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS08940
Response regulator OmpR family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS08940Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:155:1e-21:231:77:77- Raw architecture: Response_reg:7:1.74e-37:116:111:111#Trans_reg_C:155:1e-21:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3008-4797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_08945RefSeq proteinWP_110436634.1
Context group ID
GCF_003481925::NZ_QUMC01000015.1::G00013Context members
DXB00_RS08940DXB00_RS08945
Partner locus tags
DXB00_RS08940DXB00_RS08945
Partner old locus tags
DXB00_08945DXB00_08950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110436634.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W3F9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W3F9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS08940Primary locus identifier stored in the genes table.
Old locus tagDXB00_08945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000015.1Sequence record reported by the local genomic context database.
Genomic interval3 008-3 721 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 008-4 797 ntGCF_003481925::NZ_QUMC01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000015.1All displayed genes belong to this local TCS context.
Neighborhood span3 008-4 797 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 008 nt4 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS08940GCF_003481925#DXB00_RS08940
RROmpRCurrent focus
3 008-3 721 nt · Reverse (-)
DXB00_RS08945GCF_003481925#DXB00_RS08945
HKClassic
3 718-4 797 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477715#DWZ82_RS13630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968588
Simplified PFAM architecture for RROC_0968588
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_0968588
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_003477715#DWZ82_RS13630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key