1 HAMP#1
88-157 aa · 70 aa · 18.3% of protein
Raw token
HAMP:88:0.000000000466:157:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS08860
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS08860Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 383 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-227 aa · 67 aa · 17.5% of protein
Raw token
HisKA:161:0.0000000000342:227:67:643 HATPase_c#3
269-379 aa · 111 aa · 29.0% of protein
Raw token
HATPase_c:269:1.22e-33:379:111:109- Raw architecture: HAMP:88:0.000000000466:157:70:69#HisKA:161:0.0000000000342:227:67:64#HATPase_c:269:1.22e-33:379:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000014.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span74759-75910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_08865RefSeq proteinWP_118729193.1
Context group ID
GCF_003481925::NZ_QUMC01000014.1::G00012Context members
DXB00_RS08860
Partner locus tags
DXB00_RS08860
Partner old locus tags
DXB00_08865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729193.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS08860Primary locus identifier stored in the genes table.
Old locus tagDXB00_08865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000014.1Sequence record reported by the local genomic context database.
Genomic interval74 759-75 910 nt1 152 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 759-75 910 ntGCF_003481925::NZ_QUMC01000014.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000014.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000014.1All displayed genes belong to this local TCS context.
Neighborhood span74 759-75 910 nt1 152 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 759 nt75 910 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS08860GCF_003481925#DXB00_RS08860
HKClassicCurrent focus
74 759-75 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS04115Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2583594
Simplified PFAM architecture for HKOC_2583594
PFAM domain coverage: 226 / 383 aa (59.0%)
1 aa383 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-156] | HisKA[161-226] | HATPase_c[272-379]
- Domain count: 3
- Matched identifier: HKOC_2583594
- Positioned domains: HAMP 105-156 ; HisKA 161-226 ; HATPase_c 272-379
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key