1 PBPb#1
37-255 aa · 219 aa · 23.3% of protein
Raw token
PBPb:37:3.52e-19:255:232:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS08760
Histidine kinase, Hybrid
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeHybridLength939 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS08760Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage665 / 939 aa (70.8%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 PBPb#2
332-481 aa · 150 aa · 16.0% of protein
Raw token
PBPb:332:0.00000000000000543:481:160:2193 HisKA#3
562-628 aa · 67 aa · 7.1% of protein
Raw token
HisKA:562:2.91e-16:628:67:644 HATPase_c#4
677-792 aa · 116 aa · 12.4% of protein
Raw token
HATPase_c:677:7.04e-26:792:117:1095 Response_reg#5
816-928 aa · 113 aa · 12.0% of protein
Raw token
Response_reg:816:4.03e-25:928:113:111- Raw architecture: PBPb:37:3.52e-19:255:232:219#PBPb:332:0.00000000000000543:481:160:219#HisKA:562:2.91e-16:628:67:64#HATPase_c:677:7.04e-26:792:117:109#Response_reg:816:4.03e-25:928:113:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000014.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span42552-45371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_08765RefSeq proteinWP_158581285.1
Context group ID
GCF_003481925::NZ_QUMC01000014.1::G00011Context members
DXB00_RS08760
Partner locus tags
DXB00_RS08760
Partner old locus tags
DXB00_08765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158581285.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS08760Primary locus identifier stored in the genes table.
Old locus tagDXB00_08765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000014.1Sequence record reported by the local genomic context database.
Genomic interval42 552-45 371 nt2 820 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 552-45 371 ntGCF_003481925::NZ_QUMC01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000014.1All displayed genes belong to this local TCS context.
Neighborhood span42 552-45 371 nt2 820 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 552 nt45 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS08760GCF_003481925#DXB00_RS08760
HKHybridCurrent focus
42 552-45 371 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS08760The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341407
Simplified PFAM architecture for HKOC_0341407
PFAM domain coverage: 509 / 939 aa (54.2%)
1 aa939 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[44-254] | HisKA[562-628] | HATPase_c[678-792] | Response_reg[816-931]
- Domain count: 4
- Matched identifier: HKOC_0341407
- Positioned domains: SBP_bac_3 44-254 ; HisKA 562-628 ; HATPase_c 678-792 ; Response_reg 816-931
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS08760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key