1 HAMP#1
182-252 aa · 71 aa · 14.0% of protein
Raw token
HAMP:182:0.00000000000326:252:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS08245
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS08245Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 508 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HisKA#2
277-344 aa · 68 aa · 13.4% of protein
Raw token
HisKA:277:0.00000000000000387:344:68:643 HATPase_c#3
388-496 aa · 109 aa · 21.5% of protein
Raw token
HATPase_c:388:1.48e-25:496:110:109- Raw architecture: HAMP:182:0.00000000000326:252:71:69#HisKA:277:0.00000000000000387:344:68:64#HATPase_c:388:1.48e-25:496:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000013.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12446-14649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_08250RefSeq proteinWP_119214784.1
Context group ID
GCF_003481925::NZ_QUMC01000013.1::G00008Context members
DXB00_RS08240DXB00_RS08245
Partner locus tags
DXB00_RS08240DXB00_RS08245
Partner old locus tags
DXB00_08245DXB00_08250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119214784.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1DW51Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1DW51_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS08245Primary locus identifier stored in the genes table.
Old locus tagDXB00_08250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000013.1Sequence record reported by the local genomic context database.
Genomic interval13 123-14 649 nt1 527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 446-14 649 ntGCF_003481925::NZ_QUMC01000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000013.1All displayed genes belong to this local TCS context.
Neighborhood span12 446-14 649 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 446 nt14 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS08240GCF_003481925#DXB00_RS08240
RROmpR
12 446-13 126 nt · Forward (+)
DXB00_RS08245GCF_003481925#DXB00_RS08245
HKClassicCurrent focus
13 123-14 649 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS08245The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1437525
Simplified PFAM architecture for HKOC_1437525
PFAM domain coverage: 230 / 508 aa (45.3%)
1 aa508 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-252] | HisKA[277-343] | HATPase_c[389-497]
- Domain count: 3
- Matched identifier: HKOC_1437525
- Positioned domains: HAMP 199-252 ; HisKA 277-343 ; HATPase_c 389-497
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS08245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key