1 Response_reg#1
4-105 aa · 102 aa · 19.1% of protein
Raw token
Response_reg:4:1.41e-30:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS07990
Response regulator, unclassified
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS07990Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 535 aa (34.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-479 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:438:0.00000000399:479:42:423 HTH_AraC#3
492-529 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:492:0.00000000718:529:38:42- Raw architecture: Response_reg:4:1.41e-30:105:102:111#HTH_AraC:438:0.00000000399:479:42:42#HTH_AraC:492:0.00000000718:529:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47058-50349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_07995RefSeq proteinWP_119214767.1
Context group ID
GCF_003481925::NZ_QUMC01000012.1::G00007Context members
DXB00_RS07985DXB00_RS07990
Partner locus tags
DXB00_RS07985DXB00_RS07990
Partner old locus tags
DXB00_07990DXB00_07995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119214767.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS07990Primary locus identifier stored in the genes table.
Old locus tagDXB00_07995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000012.1Sequence record reported by the local genomic context database.
Genomic interval48 742-50 349 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 058-50 349 ntGCF_003481925::NZ_QUMC01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000012.1All displayed genes belong to this local TCS context.
Neighborhood span47 058-50 349 nt3 292 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 058 nt50 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS07985GCF_003481925#DXB00_RS07985
HKClassic
47 058-48 764 nt · Forward (+)
DXB00_RS07990GCF_003481925#DXB00_RS07990
RRunclassifiedCurrent focus
48 742-50 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS07990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101068
Simplified PFAM architecture for RROC_0101068
PFAM domain coverage: 182 / 535 aa (34.0%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-106] | HTH_18[452-530]
- Domain count: 2
- Matched identifier: RROC_0101068
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; HTH_18 452-530 ; HTH_18 452-530
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS07990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key