1 Response_reg#1
51-110 aa · 60 aa · 51.3% of protein
Raw token
Response_reg:51:0.0000146:110:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS07080
Response regulator, CheY family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeCheYLength117 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS07080Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length117 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage60 / 117 aa (51.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa117 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:51:0.0000146:110:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000010.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39260-39613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_07085RefSeq proteinWP_118729971.1
Context group ID
GCF_003481925::NZ_QUMC01000010.1::G00004Context members
DXB00_RS07080
Partner locus tags
DXB00_RS07080
Partner old locus tags
DXB00_07085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118729971.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1E0W6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1E0W6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS07080Primary locus identifier stored in the genes table.
Old locus tagDXB00_07085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000010.1Sequence record reported by the local genomic context database.
Genomic interval39 260-39 613 nt354 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 260-39 613 ntGCF_003481925::NZ_QUMC01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000010.1All displayed genes belong to this local TCS context.
Neighborhood span39 260-39 613 nt354 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 260 nt39 613 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS07080GCF_003481925#DXB00_RS07080
RRCheYCurrent focus
39 260-39 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS10960Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2461257
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS10960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key