1 HAMP#1
196-265 aa · 70 aa · 13.6% of protein
Raw token
HAMP:196:0.0000000000359:265:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS07010
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength516 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS07010Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 516 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HisKA#2
269-336 aa · 68 aa · 13.2% of protein
Raw token
HisKA:269:1.76e-19:336:68:643 HATPase_c#3
383-488 aa · 106 aa · 20.5% of protein
Raw token
HATPase_c:383:8.37e-30:488:107:109- Raw architecture: HAMP:196:0.0000000000359:265:70:69#HisKA:269:1.76e-19:336:68:64#HATPase_c:383:8.37e-30:488:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000010.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18467-20017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_07015RefSeq proteinWP_118729981.1
Context group ID
GCF_003481925::NZ_QUMC01000010.1::G00003Context members
DXB00_RS07010
Partner locus tags
DXB00_RS07010
Partner old locus tags
DXB00_07015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729981.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS07010Primary locus identifier stored in the genes table.
Old locus tagDXB00_07015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000010.1Sequence record reported by the local genomic context database.
Genomic interval18 467-20 017 nt1 551 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 467-20 017 ntGCF_003481925::NZ_QUMC01000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000010.1All displayed genes belong to this local TCS context.
Neighborhood span18 467-20 017 nt1 551 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 467 nt20 017 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS07010GCF_003481925#DXB00_RS07010
HKClassicCurrent focus
18 467-20 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS11010Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1405061
Simplified PFAM architecture for HKOC_1405061
PFAM domain coverage: 226 / 516 aa (43.8%)
1 aa516 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[214-264] | HisKA[269-336] | HATPase_c[383-489]
- Domain count: 3
- Matched identifier: HKOC_1405061
- Positioned domains: HAMP 214-264 ; HisKA 269-336 ; HATPase_c 383-489
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS11010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key