1 sCache_like#1
36-128 aa · 93 aa · 16.9% of protein
Raw token
sCache_like:36:0.000000039:128:101:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS05330
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength549 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS05330Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length549 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 549 aa (66.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa549 aa
Domain-by-domain annotation4 items
2 PAS_9#2
231-321 aa · 91 aa · 16.6% of protein
Raw token
PAS_9:231:0.0000196:321:103:1023 HisKA#3
328-394 aa · 67 aa · 12.2% of protein
Raw token
HisKA:328:3.55e-18:394:67:644 HATPase_c#4
438-549 aa · 112 aa · 20.4% of protein
Raw token
HATPase_c:438:2.84e-26:549:113:109- Raw architecture: sCache_like:36:0.000000039:128:101:114#PAS_9:231:0.0000196:321:103:102#HisKA:328:3.55e-18:394:67:64#HATPase_c:438:2.84e-26:549:113:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000007.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73-1722Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_05330RefSeq proteinWP_118728791.1
Context group ID
GCF_003481925::NZ_QUMC01000007.1::G00037Context members
DXB00_RS05330
Partner locus tags
DXB00_RS05330
Partner old locus tags
DXB00_05330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118728791.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS05330Primary locus identifier stored in the genes table.
Old locus tagDXB00_05330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000007.1Sequence record reported by the local genomic context database.
Genomic interval73-1 722 nt1 650 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73-1 722 ntGCF_003481925::NZ_QUMC01000007.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000007.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span73-1 722 nt1 650 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 nt1 722 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS05330GCF_003481925#DXB00_RS05330
HKClassicCurrent focus
73-1 722 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS00595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1296117
Simplified PFAM architecture for HKOC_1296117
PFAM domain coverage: 177 / 549 aa (32.2%)
1 aa549 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[328-394] | HATPase_c[439-548]
- Domain count: 2
- Matched identifier: HKOC_1296117
- Positioned domains: HisKA 328-394 ; HATPase_c 439-548
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS00595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key