1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:2.91e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS04620
Response regulator NarL family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeNarLLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS04620Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 225 aa (75.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 25.3% of protein
Raw token
HTH_LUXR:155:2.6e-19:211:57:58- Raw architecture: Response_reg:4:2.91e-32:116:113:111#HTH_LUXR:155:2.6e-19:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000005.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115988-117950Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_04620RefSeq proteinWP_118729078.1
Context group ID
GCF_003481925::NZ_QUMC01000005.1::G00035Context members
DXB00_RS04620DXB00_RS17040
Partner locus tags
DXB00_RS04620DXB00_RS17040
Partner old locus tags
DXB00_04620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS04620Primary locus identifier stored in the genes table.
Old locus tagDXB00_04620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000005.1Sequence record reported by the local genomic context database.
Genomic interval115 988-116 665 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 988-117 950 ntGCF_003481925::NZ_QUMC01000005.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000005.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span115 988-117 950 nt1 963 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 988 nt117 950 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS04620GCF_003481925#DXB00_RS04620
RRNarLCurrent focus
115 988-116 665 nt · Reverse (-)
DXB00_RS17040GCF_003481925#DXB00_RS17040
HKClassic
116 658-117 950 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1480037
Simplified PFAM architecture for RROC_1480037
PFAM domain coverage: 166 / 225 aa (73.8%)
1 aa225 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[159-211]
- Domain count: 2
- Matched identifier: RROC_1480037
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 159-211 ; GerE 159-211
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key