1 HAMP#1
272-338 aa · 67 aa · 11.8% of protein
Raw token
HAMP:272:0.00000000000422:338:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS04245
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength566 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS04245Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length566 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 566 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa566 aa
Domain-by-domain annotation3 items
2 His_kinase#2
355-435 aa · 81 aa · 14.3% of protein
Raw token
His_kinase:355:3.21e-25:435:81:803 HATPase_c#3
456-553 aa · 98 aa · 17.3% of protein
Raw token
HATPase_c:456:0.00000000000251:553:105:109- Raw architecture: HAMP:272:0.00000000000422:338:67:69#His_kinase:355:3.21e-25:435:81:80#HATPase_c:456:0.00000000000251:553:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000005.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30648-33934Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_04245RefSeq proteinWP_118729035.1
Context group ID
GCF_003481925::NZ_QUMC01000005.1::G00034Context members
DXB00_RS04245DXB00_RS04250
Partner locus tags
DXB00_RS04245DXB00_RS04250
Partner old locus tags
DXB00_04245DXB00_04250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS04245Primary locus identifier stored in the genes table.
Old locus tagDXB00_04245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000005.1Sequence record reported by the local genomic context database.
Genomic interval30 648-32 348 nt1 701 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 648-33 934 ntGCF_003481925::NZ_QUMC01000005.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000005.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000005.1All displayed genes belong to this local TCS context.
Neighborhood span30 648-33 934 nt3 287 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 648 nt33 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS04245GCF_003481925#DXB00_RS04245
HKClassicCurrent focus
30 648-32 348 nt · Forward (+)
DXB00_RS04250GCF_003481925#DXB00_RS04250
RRunclassified
32 342-33 934 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS02850Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1230517
Simplified PFAM architecture for HKOC_1230517
PFAM domain coverage: 228 / 566 aa (40.3%)
1 aa566 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[293-339] | His_kinase[355-435] | HATPase_c[455-554]
- Domain count: 3
- Matched identifier: HKOC_1230517
- Positioned domains: HAMP 293-339 ; His_kinase 355-435 ; HATPase_c 455-554
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS02850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key