1 HisKA#1
341-407 aa · 67 aa · 9.3% of protein
Raw token
HisKA:341:0.00000000000000967:407:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS03745
Histidine kinase, Hybrid
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS03745Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 721 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-572 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:454:6.59e-28:572:120:1093 Response_reg#3
596-713 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:596:1.75e-23:713:118:111- Raw architecture: HisKA:341:0.00000000000000967:407:67:64#HATPase_c:454:6.59e-28:572:120:109#Response_reg:596:1.75e-23:713:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000004.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span80704-82869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_03740RefSeq proteinWP_118729441.1
Context group ID
GCF_003481925::NZ_QUMC01000004.1::G00031Context members
DXB00_RS03745
Partner locus tags
DXB00_RS03745
Partner old locus tags
DXB00_03740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729441.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS03745Primary locus identifier stored in the genes table.
Old locus tagDXB00_03740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000004.1Sequence record reported by the local genomic context database.
Genomic interval80 704-82 869 nt2 166 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 704-82 869 ntGCF_003481925::NZ_QUMC01000004.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000004.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span80 704-82 869 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 704 nt82 869 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS03745GCF_003481925#DXB00_RS03745
HKHybridCurrent focus
80 704-82 869 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS06075Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730904
Simplified PFAM architecture for HKOC_0730904
PFAM domain coverage: 300 / 721 aa (41.6%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-407] | HATPase_c[455-570] | Response_reg[596-712]
- Domain count: 3
- Matched identifier: HKOC_0730904
- Positioned domains: HisKA 341-407 ; HATPase_c 455-570 ; Response_reg 596-712
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS06075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key