1 HisKA#1
418-481 aa · 64 aa · 9.9% of protein
Raw token
HisKA:418:0.000000000000138:481:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS03025
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength644 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS03025Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length644 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 644 aa (26.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa644 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
529-633 aa · 105 aa · 16.3% of protein
Raw token
HATPase_c:529:4.95e-26:633:109:109- Raw architecture: HisKA:418:0.000000000000138:481:64:64#HATPase_c:529:4.95e-26:633:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100456-103054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_03025RefSeq proteinWP_118728999.1
Context group ID
GCF_003481925::NZ_QUMC01000003.1::G00024Context members
DXB00_RS03020DXB00_RS03025
Partner locus tags
DXB00_RS03020DXB00_RS03025
Partner old locus tags
DXB00_03020DXB00_03025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118728999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS03025Primary locus identifier stored in the genes table.
Old locus tagDXB00_03025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000003.1Sequence record reported by the local genomic context database.
Genomic interval101 120-103 054 nt1 935 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 456-103 054 ntGCF_003481925::NZ_QUMC01000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span100 456-103 054 nt2 599 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 456 nt103 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS03020GCF_003481925#DXB00_RS03020
RROmpR
100 456-101 130 nt · Reverse (-)
DXB00_RS03025GCF_003481925#DXB00_RS03025
HKClassicCurrent focus
101 120-103 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS02545Use this link to inspect the representative gene detail.
PFAM architecture7TMR-DISM_7TM + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0911457
Simplified PFAM architecture for HKOC_0911457
PFAM domain coverage: 369 / 644 aa (57.3%)
1 aa644 aa
7TMR-DISM_7TMHisKAHATPase_c
- Simplified architecture: 7TMR-DISM_7TM + HisKA + HATPase_c
- Raw architecture: 7TMR-DISM_7TM[191-390] | HisKA[418-483] | HATPase_c[530-632]
- Domain count: 3
- Matched identifier: HKOC_0911457
- Positioned domains: 7TMR-DISM_7TM 191-390 ; HisKA 418-483 ; HATPase_c 530-632
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key