1 Response_reg#1
6-120 aa · 115 aa · 42.9% of protein
Raw token
Response_reg:6:8.97e-25:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS01330
Response regulator Spo0A family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeSpo0ALength268 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481505#DXB70_RS01330Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 268 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Spo0A_C#2
157-260 aa · 104 aa · 38.8% of protein
Raw token
Spo0A_C:157:1.13e-62:260:104:104- Raw architecture: Response_reg:6:8.97e-25:120:115:111#Spo0A_C:157:1.13e-62:260:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481505::NZ_QULJ01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span278820-279626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_01330RefSeq proteinWP_118672527.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00006Context members
DXB70_RS01330
Partner locus tags
DXB70_RS01330
Partner old locus tags
DXB70_01330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118672527.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS01330Primary locus identifier stored in the genes table.
Old locus tagDXB70_01330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval278 820-279 626 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span278 820-279 626 ntGCF_003481505::NZ_QULJ01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span278 820-279 626 nt807 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
278 820 nt279 626 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB70_RS01330GCF_003481505#DXB70_RS01330
RRSpo0ACurrent focus
278 820-279 626 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS01330The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0620260
Simplified PFAM architecture for RROC_0620260
PFAM domain coverage: 219 / 268 aa (81.7%)
1 aa268 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[157-260]
- Domain count: 2
- Matched identifier: RROC_0620260
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 157-260 ; Spo0A_C 157-260
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS01330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key