1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:1.79e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS00705
Response regulator OmpR family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS00705Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:4.31e-32:228:77:77- Raw architecture: Response_reg:4:1.79e-35:113:111:111#Trans_reg_C:152:4.31e-32:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span152416-155700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_00705RefSeq proteinWP_022360531.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00003Context members
DXB70_RS00700DXB70_RS00705
Partner locus tags
DXB70_RS00700DXB70_RS00705
Partner old locus tags
DXB70_00700DXB70_00705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022360531.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X1B9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X1B9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS00705Primary locus identifier stored in the genes table.
Old locus tagDXB70_00705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval155 005-155 700 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 416-155 700 ntGCF_003481505::NZ_QULJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span152 416-155 700 nt3 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 416 nt155 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS00700GCF_003481505#DXB70_RS00700
HKClassic
152 416-154 959 nt · Reverse (-)
DXB70_RS00705GCF_003481505#DXB70_RS00705
RROmpRCurrent focus
155 005-155 700 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS11850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1160127
Simplified PFAM architecture for RROC_1160127
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1160127
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS11850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key