1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:1.79e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO97_RS11850
Response regulator OmpR family
Clostridium sp. CAG:43 · GCF_000434655
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000434655#QVO97_RS11850Stable P2CS identifier used across views.
GenomeGCF_000434655Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:4.31e-32:228:77:77- Raw architecture: Response_reg:4:1.79e-35:113:111:111#Trans_reg_C:152:4.31e-32:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000434655::NZ_FR895115.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63548-66832Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN653_02129RefSeq proteinWP_022360531.1
Context group ID
GCF_000434655::NZ_FR895115.1::G00023Context members
QVO97_RS11845QVO97_RS11850
Partner locus tags
QVO97_RS11845QVO97_RS11850
Partner old locus tags
BN653_02128BN653_02129
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022360531.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X1B9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X1B9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO97_RS11850Primary locus identifier stored in the genes table.
Old locus tagBN653_02129Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR895115.1Sequence record reported by the local genomic context database.
Genomic interval66 137-66 832 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 548-66 832 ntGCF_000434655::NZ_FR895115.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000434655::NZ_FR895115.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR895115.1All displayed genes belong to this local TCS context.
Neighborhood span63 548-66 832 nt3 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 548 nt66 832 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVO97_RS11845GCF_000434655#QVO97_RS11845
HKClassic
63 548-66 091 nt · Reverse (-)
QVO97_RS11850GCF_000434655#QVO97_RS11850
RROmpRCurrent focus
66 137-66 832 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS11850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1160127
Simplified PFAM architecture for RROC_1160127
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1160127
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS11850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 805 · GCF_000434655
AssemblyMGS43 · Scaffoldhaploid
Genome composition2 618 944 bp · 49,0% GCClostridium sp. CAG:43
Signal transduction countsGenes 44 · HK 22 · RR 21CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key