1 SBP_bac_3#1
43-259 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:43:1.24e-28:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS15730
Histidine kinase, Hybrid
Blautia sp. TM10-2 · GCF_003480845
ClassHKTypeHybridLength957 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480845#DXD92_RS15730Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length957 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage721 / 957 aa (75.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa957 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.1% of protein
Raw token
SBP_bac_3:281:1.03e-19:482:219:2243 HisKA#3
577-643 aa · 67 aa · 7.0% of protein
Raw token
HisKA:577:7.76e-18:643:67:644 HATPase_c#4
691-808 aa · 118 aa · 12.3% of protein
Raw token
HATPase_c:691:2.14e-26:808:119:1095 Response_reg#5
829-945 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:829:2.31e-30:945:117:111- Raw architecture: SBP_bac_3:43:1.24e-28:259:229:224#SBP_bac_3:281:1.03e-19:482:219:224#HisKA:577:7.76e-18:643:67:64#HATPase_c:691:2.14e-26:808:119:109#Response_reg:829:2.31e-30:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480845::NZ_QUJZ01000016.1::G00022
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span81642-86800Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD92_15750RefSeq proteinWP_118640990.1
Context group ID
GCF_003480845::NZ_QUJZ01000016.1::G00022Context members
DXD92_RS15720DXD92_RS15730
Partner locus tags
DXD92_RS15720DXD92_RS15730
Partner old locus tags
DXD92_15740DXD92_15750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118640990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS15730Primary locus identifier stored in the genes table.
Old locus tagDXD92_15750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJZ01000016.1Sequence record reported by the local genomic context database.
Genomic interval83 927-86 800 nt2 874 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 642-86 800 ntGCF_003480845::NZ_QUJZ01000016.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000016.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span81 642-86 800 nt5 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 642 nt86 800 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD92_RS15720GCF_003480845#DXD92_RS15720
HKHybrid
81 642-83 564 nt · Reverse (-)
DXD92_RS15730GCF_003480845#DXD92_RS15730
HKHybridCurrent focus
83 927-86 800 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480845#DXD92_RS15730The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0320237
Simplified PFAM architecture for HKOC_0320237
PFAM domain coverage: 507 / 957 aa (53.0%)
1 aa957 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-258] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0320237
- Positioned domains: SBP_bac_3 51-258 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_003480845#DXD92_RS15730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key