1 HAMP#1
77-145 aa · 69 aa · 18.7% of protein
Raw token
HAMP:77:0.000000603:145:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD92_RS01800
Histidine kinase, Classic
Blautia sp. TM10-2 · GCF_003480845
ClassHKTypeClassicLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480845#DXD92_RS01800Stable P2CS identifier used across views.
GenomeGCF_003480845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 369 aa (61.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-219 aa · 62 aa · 16.8% of protein
Raw token
HisKA:158:0.000000036:219:63:643 HATPase_c#3
269-363 aa · 95 aa · 25.7% of protein
Raw token
HATPase_c:269:3.84e-18:363:97:109- Raw architecture: HAMP:77:0.000000603:145:69:69#HisKA:158:0.000000036:219:63:64#HATPase_c:269:3.84e-18:363:97:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480845::NZ_QUJZ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span334613-336381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD92_01795RefSeq proteinWP_308796015.1
Context group ID
GCF_003480845::NZ_QUJZ01000001.1::G00004Context members
DXD92_RS01795DXD92_RS01800
Partner locus tags
DXD92_RS01795DXD92_RS01800
Partner old locus tags
DXD92_01790DXD92_01795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308796015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD92_RS01800Primary locus identifier stored in the genes table.
Old locus tagDXD92_01795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval335 272-336 381 nt1 110 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span334 613-336 381 ntGCF_003480845::NZ_QUJZ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480845::NZ_QUJZ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span334 613-336 381 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
334 613 nt336 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD92_RS01795GCF_003480845#DXD92_RS01795
RROmpR
334 613-335 284 nt · Forward (+)
DXD92_RS01800GCF_003480845#DXD92_RS01800
HKClassicCurrent focus
335 272-336 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS17105Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2691907
Simplified PFAM architecture for HKOC_2691907
PFAM domain coverage: 205 / 369 aa (55.6%)
1 aa369 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[100-146] | HisKA[159-218] | HATPase_c[267-364]
- Domain count: 3
- Matched identifier: HKOC_2691907
- Positioned domains: HAMP 100-146 ; HisKA 159-218 ; HATPase_c 267-364
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS17105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 990 · GCF_003480845
AssemblyASM348084v1 · Scaffoldhaploid
Genome composition3 847 374 bp · 46,5% GCBlautia sp. TM10-2
Signal transduction countsGenes 90 · HK 46 · RR 41CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key