1 HAMP#1
174-243 aa · 70 aa · 14.8% of protein
Raw token
HAMP:174:0.00000000017:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX68_RS11765
Histidine kinase, Classic
Clostridium sp. AF20-7 · GCF_003479275
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479275#DWX68_RS11765Stable P2CS identifier used across views.
GenomeGCF_003479275Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 472 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-312 aa · 62 aa · 13.1% of protein
Raw token
HisKA:251:0.00000000000000248:312:62:643 HATPase_c#3
358-470 aa · 113 aa · 23.9% of protein
Raw token
HATPase_c:358:5.09e-32:470:113:109- Raw architecture: HAMP:174:0.00000000017:243:70:69#HisKA:251:0.00000000000000248:312:62:64#HATPase_c:358:5.09e-32:470:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479275::NZ_QUGF01000010.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102134-104318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX68_11770RefSeq proteinWP_118522499.1
Context group ID
GCF_003479275::NZ_QUGF01000010.1::G00010Context members
DWX68_RS11765DWX68_RS11770
Partner locus tags
DWX68_RS11765DWX68_RS11770
Partner old locus tags
DWX68_11770DWX68_11775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118522499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX68_RS11765Primary locus identifier stored in the genes table.
Old locus tagDWX68_11770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGF01000010.1Sequence record reported by the local genomic context database.
Genomic interval102 134-103 552 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 134-104 318 ntGCF_003479275::NZ_QUGF01000010.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479275::NZ_QUGF01000010.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGF01000010.1All displayed genes belong to this local TCS context.
Neighborhood span102 134-104 318 nt2 185 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 134 nt104 318 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX68_RS11765GCF_003479275#DWX68_RS11765
HKClassicCurrent focus
102 134-103 552 nt · Reverse (-)
DWX68_RS11770GCF_003479275#DWX68_RS11770
RROmpR
103 605-104 318 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478415#DWY89_RS11980Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1699100
Simplified PFAM architecture for HKOC_1699100
PFAM domain coverage: 217 / 472 aa (46.0%)
1 aa472 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-242] | HisKA[249-312] | HATPase_c[361-469]
- Domain count: 3
- Matched identifier: HKOC_1699100
- Positioned domains: HAMP 199-242 ; HisKA 249-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_003478415#DWY89_RS11980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 002 · GCF_003479275
AssemblyASM347927v1 · Scaffoldhaploid
Genome composition3 148 106 bp · 48,0% GCClostridium sp. AF20-7
Signal transduction countsGenes 62 · HK 34 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key