1 GGDEF#1
203-351 aa · 149 aa · 14.1% of protein
Raw token
GGDEF:203:3.79e-17:351:160:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX68_RS06570
Histidine kinase, Hybrid
Clostridium sp. AF20-7 · GCF_003479275
ClassHKTypeHybridLength1059 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479275#DWX68_RS06570Stable P2CS identifier used across views.
GenomeGCF_003479275Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1059 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage450 / 1059 aa (42.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1059 aa
Domain-by-domain annotation4 items
2 HisKA#2
678-744 aa · 67 aa · 6.3% of protein
Raw token
HisKA:678:0.00000000000000744:744:67:643 HATPase_c#3
793-910 aa · 118 aa · 11.1% of protein
Raw token
HATPase_c:793:6e-28:910:118:1094 Response_reg#4
934-1049 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:934:6.71e-25:1049:116:111- Raw architecture: GGDEF:203:3.79e-17:351:160:160#HisKA:678:0.00000000000000744:744:67:64#HATPase_c:793:6e-28:910:118:109#Response_reg:934:6.71e-25:1049:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479275::NZ_QUGF01000005.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span151701-154880Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX68_06575RefSeq proteinWP_118628906.1
Context group ID
GCF_003479275::NZ_QUGF01000005.1::G00023Context members
DWX68_RS06570
Partner locus tags
DWX68_RS06570
Partner old locus tags
DWX68_06575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118628906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX68_RS06570Primary locus identifier stored in the genes table.
Old locus tagDWX68_06575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGF01000005.1Sequence record reported by the local genomic context database.
Genomic interval151 701-154 880 nt3 180 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 701-154 880 ntGCF_003479275::NZ_QUGF01000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479275::NZ_QUGF01000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGF01000005.1All displayed genes belong to this local TCS context.
Neighborhood span151 701-154 880 nt3 180 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 701 nt154 880 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX68_RS06570GCF_003479275#DWX68_RS06570
HKHybridCurrent focus
151 701-154 880 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479275#DWX68_RS06570The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0253115
Simplified PFAM architecture for HKOC_0253115
PFAM domain coverage: 448 / 1059 aa (42.3%)
1 aa1059 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[204-352] | HisKA[678-744] | HATPase_c[794-909] | Response_reg[934-1049]
- Domain count: 4
- Matched identifier: HKOC_0253115
- Positioned domains: GGDEF 204-352 ; HisKA 678-744 ; HATPase_c 794-909 ; Response_reg 934-1049
Cluster members and taxonomy
Representative gene: GCF_003479275#DWX68_RS06570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 002 · GCF_003479275
AssemblyASM347927v1 · Scaffoldhaploid
Genome composition3 148 106 bp · 48,0% GCClostridium sp. AF20-7
Signal transduction countsGenes 62 · HK 34 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key