1 Response_reg#1
237-353 aa · 117 aa · 31.4% of protein
Raw token
Response_reg:237:1.27e-26:353:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX32_RS17835
Response regulator, unclassified
Blautia sp. AF19-13LB · GCF_003479105
ClassRRTypeunclassifiedLength373 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479105#DWX32_RS17835Stable P2CS identifier used across views.
GenomeGCF_003479105Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length373 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 373 aa (31.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa373 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:237:1.27e-26:353:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479105::NZ_QUGO01000028.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9184-13250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX32_17855RefSeq proteinWP_330421847.1
Context group ID
GCF_003479105::NZ_QUGO01000028.1::G00033Context members
DWX32_RS17835DWX32_RS17840
Partner locus tags
DWX32_RS17835DWX32_RS17840
Partner old locus tags
DWX32_17855DWX32_17860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330421847.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX32_RS17835Primary locus identifier stored in the genes table.
Old locus tagDWX32_17855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGO01000028.1Sequence record reported by the local genomic context database.
Genomic interval9 184-10 305 nt1 122 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 184-13 250 ntGCF_003479105::NZ_QUGO01000028.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479105::NZ_QUGO01000028.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGO01000028.1All displayed genes belong to this local TCS context.
Neighborhood span9 184-13 250 nt4 067 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 184 nt13 250 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX32_RS17835GCF_003479105#DWX32_RS17835
RRunclassifiedCurrent focus
9 184-10 305 nt · Forward (+)
DWX32_RS17840GCF_003479105#DWX32_RS17840
HKHybrid
10 419-13 250 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479105#DWX32_RS17835The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0436148
Simplified PFAM architecture for RROC_0436148
PFAM domain coverage: 233 / 373 aa (62.5%)
1 aa373 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[91-207] | Response_reg[237-352]
- Domain count: 2
- Matched identifier: RROC_0436148
- Positioned domains: HATPase_c 91-207 ; HATPase_c 91-207 ; Response_reg 237-352 ; Response_reg 237-352
Cluster members and taxonomy
Representative gene: GCF_003479105#DWX32_RS17835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 962 · GCF_003479105
AssemblyASM347910v1 · Scaffoldhaploid
Genome composition4 009 812 bp · 47,5% GCBlautia sp. AF19-13LB
Signal transduction countsGenes 99 · HK 49 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key