1 Response_reg#1
6-115 aa · 110 aa · 45.3% of protein
Raw token
Response_reg:6:7.6e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS09280
Response regulator OmpR family
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS09280Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 243 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 31.7% of protein
Raw token
Trans_reg_C:153:1.83e-23:229:77:77- Raw architecture: Response_reg:6:7.6e-39:115:111:111#Trans_reg_C:153:1.83e-23:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000006.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40208-42515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_09280RefSeq proteinWP_118063965.1
Context group ID
GCF_003478985::NZ_QUGH01000006.1::G00056Context members
DWX61_RS09280DWX61_RS09285
Partner locus tags
DWX61_RS09280DWX61_RS09285
Partner old locus tags
DWX61_09280DWX61_09285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118063965.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS09280Primary locus identifier stored in the genes table.
Old locus tagDWX61_09280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000006.1Sequence record reported by the local genomic context database.
Genomic interval40 208-40 939 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 208-42 515 ntGCF_003478985::NZ_QUGH01000006.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000006.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000006.1All displayed genes belong to this local TCS context.
Neighborhood span40 208-42 515 nt2 308 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 208 nt42 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS09280GCF_003478985#DWX61_RS09280
RROmpRCurrent focus
40 208-40 939 nt · Reverse (-)
DWX61_RS09285GCF_003478985#DWX61_RS09285
HKClassic
40 932-42 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS09280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0829573
Simplified PFAM architecture for RROC_0829573
PFAM domain coverage: 186 / 243 aa (76.5%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0829573
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS09280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key