1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.00000224:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS07645
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS07645Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 343 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
240-343 aa · 104 aa · 30.3% of protein
Raw token
HATPase_c:240:1.06e-24:343:104:109- Raw architecture: HisKA:123:0.00000224:189:67:64#HATPase_c:240:1.06e-24:343:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span456-2176Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_07645RefSeq proteinWP_118624600.1
Context group ID
GCF_003478985::NZ_QUGH01000005.1::G00046Context members
DWX61_RS07640DWX61_RS07645
Partner locus tags
DWX61_RS07640DWX61_RS07645
Partner old locus tags
DWX61_07640DWX61_07645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118624600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS07645Primary locus identifier stored in the genes table.
Old locus tagDWX61_07645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000005.1Sequence record reported by the local genomic context database.
Genomic interval1 145-2 176 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span456-2 176 ntGCF_003478985::NZ_QUGH01000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000005.1All displayed genes belong to this local TCS context.
Neighborhood span456-2 176 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
456 nt2 176 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS07640GCF_003478985#DWX61_RS07640
RROmpR
456-1 148 nt · Forward (+)
DWX61_RS07645GCF_003478985#DWX61_RS07645
HKClassicCurrent focus
1 145-2 176 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS07645The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828859
Simplified PFAM architecture for HKOC_2828859
PFAM domain coverage: 172 / 343 aa (50.1%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2828859
- Positioned domains: HisKA 125-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS07645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key