1 Response_reg#1
4-116 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:4:1.77e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS06985
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478985#DWX61_RS06985Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 504 aa (36.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-448 aa · 41 aa · 8.1% of protein
Raw token
HTH_AraC:408:0.00000418:448:41:423 HTH_AraC#3
469-500 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:469:0.00000000577:500:32:42- Raw architecture: Response_reg:4:1.77e-25:116:113:111#HTH_AraC:408:0.00000418:448:41:42#HTH_AraC:469:0.00000000577:500:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478985::NZ_QUGH01000004.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span196160-197674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_06985RefSeq proteinWP_118624465.1
Context group ID
GCF_003478985::NZ_QUGH01000004.1::G00043Context members
DWX61_RS06985
Partner locus tags
DWX61_RS06985
Partner old locus tags
DWX61_06985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118624465.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS06985Primary locus identifier stored in the genes table.
Old locus tagDWX61_06985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000004.1Sequence record reported by the local genomic context database.
Genomic interval196 160-197 674 nt1 515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span196 160-197 674 ntGCF_003478985::NZ_QUGH01000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span196 160-197 674 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 160 nt197 674 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX61_RS06985GCF_003478985#DWX61_RS06985
RRunclassifiedCurrent focus
196 160-197 674 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS06985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153961
Simplified PFAM architecture for RROC_0153961
PFAM domain coverage: 191 / 504 aa (37.9%)
1 aa504 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[424-501]
- Domain count: 2
- Matched identifier: RROC_0153961
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 424-501 ; HTH_18 424-501
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS06985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key