1 Response_reg#1
5-105 aa · 101 aa · 19.1% of protein
Raw token
Response_reg:5:1.63e-30:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS06875
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS06875Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 528 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:432:0.00000185:473:42:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.00000000295:523:37:42- Raw architecture: Response_reg:5:1.63e-30:105:101:111#HTH_AraC:432:0.00000185:473:42:42#HTH_AraC:487:0.00000000295:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170492-173817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_06875RefSeq proteinWP_118624443.1
Context group ID
GCF_003478985::NZ_QUGH01000004.1::G00042Context members
DWX61_RS06870DWX61_RS06875
Partner locus tags
DWX61_RS06870DWX61_RS06875
Partner old locus tags
DWX61_06870DWX61_06875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118624443.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS06875Primary locus identifier stored in the genes table.
Old locus tagDWX61_06875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000004.1Sequence record reported by the local genomic context database.
Genomic interval172 231-173 817 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 492-173 817 ntGCF_003478985::NZ_QUGH01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span170 492-173 817 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 492 nt173 817 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS06870GCF_003478985#DWX61_RS06870
HKClassic
170 492-172 231 nt · Forward (+)
DWX61_RS06875GCF_003478985#DWX61_RS06875
RRunclassifiedCurrent focus
172 231-173 817 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS06875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114811
Simplified PFAM architecture for RROC_0114811
PFAM domain coverage: 189 / 528 aa (35.8%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[446-523]
- Domain count: 2
- Matched identifier: RROC_0114811
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 446-523 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS06875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key