1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:3.36e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS06135
Response regulator NarL family
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS06135Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 206 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-201 aa · 52 aa · 25.2% of protein
Raw token
HTH_LUXR:150:2.17e-21:201:52:58- Raw architecture: Response_reg:3:3.36e-26:103:101:111#HTH_LUXR:150:2.17e-21:201:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000004.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23888-25820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_06135RefSeq proteinWP_118514773.1
Context group ID
GCF_003478985::NZ_QUGH01000004.1::G00039Context members
DWX61_RS06135DWX61_RS06140
Partner locus tags
DWX61_RS06135DWX61_RS06140
Partner old locus tags
DWX61_06135DWX61_06140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118514773.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS06135Primary locus identifier stored in the genes table.
Old locus tagDWX61_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000004.1Sequence record reported by the local genomic context database.
Genomic interval23 888-24 508 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 888-25 820 ntGCF_003478985::NZ_QUGH01000004.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000004.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span23 888-25 820 nt1 933 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 888 nt25 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS06135GCF_003478985#DWX61_RS06135
RRNarLCurrent focus
23 888-24 508 nt · Reverse (-)
DWX61_RS06140GCF_003478985#DWX61_RS06140
HKClassic
24 642-25 820 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS06135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2083291
Simplified PFAM architecture for RROC_2083291
PFAM domain coverage: 154 / 206 aa (74.8%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[150-201]
- Domain count: 2
- Matched identifier: RROC_2083291
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 150-201 ; GerE 150-201
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS06135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key