1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:3.85e-25:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS04865
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS04865Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 531 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-478 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:436:0.000000572:478:43:423 HTH_AraC#3
491-527 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:491:0.0000000016:527:37:42- Raw architecture: Response_reg:4:3.85e-25:117:114:111#HTH_AraC:436:0.000000572:478:43:42#HTH_AraC:491:0.0000000016:527:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span106509-109905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_04865RefSeq proteinWP_270426997.1
Context group ID
GCF_003478985::NZ_QUGH01000003.1::G00033Context members
DWX61_RS04860DWX61_RS04865
Partner locus tags
DWX61_RS04860DWX61_RS04865
Partner old locus tags
DWX61_04860DWX61_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270426997.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS04865Primary locus identifier stored in the genes table.
Old locus tagDWX61_04865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000003.1Sequence record reported by the local genomic context database.
Genomic interval108 310-109 905 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span106 509-109 905 ntGCF_003478985::NZ_QUGH01000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span106 509-109 905 nt3 397 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 509 nt109 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS04860GCF_003478985#DWX61_RS04860
HKClassic
106 509-108 335 nt · Forward (+)
DWX61_RS04865GCF_003478985#DWX61_RS04865
RRunclassifiedCurrent focus
108 310-109 905 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS04865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110045
Simplified PFAM architecture for RROC_0110045
PFAM domain coverage: 320 / 531 aa (60.3%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[164-290] | HTH_18[450-529]
- Domain count: 3
- Matched identifier: RROC_0110045
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 164-290 ; GGDEF_2 164-290 ; HTH_18 450-529 ; HTH_18 450-529
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS04865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key