1 Response_reg#1
39-118 aa · 80 aa · 33.3% of protein
Raw token
Response_reg:39:0.0000000869:118:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS04715
Response regulator LytTR family
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478985#DWX61_RS04715Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 240 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-230 aa · 81 aa · 33.8% of protein
Raw token
LytTR:150:0.00000000000000207:230:87:98- Raw architecture: Response_reg:39:0.0000000869:118:87:111#LytTR:150:0.00000000000000207:230:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478985::NZ_QUGH01000003.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75067-75789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_04715RefSeq proteinWP_182433950.1
Context group ID
GCF_003478985::NZ_QUGH01000003.1::G00032Context members
DWX61_RS04715
Partner locus tags
DWX61_RS04715
Partner old locus tags
DWX61_04715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182433950.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS04715Primary locus identifier stored in the genes table.
Old locus tagDWX61_04715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000003.1Sequence record reported by the local genomic context database.
Genomic interval75 067-75 789 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 067-75 789 ntGCF_003478985::NZ_QUGH01000003.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000003.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span75 067-75 789 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 067 nt75 789 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX61_RS04715GCF_003478985#DWX61_RS04715
RRLytTRCurrent focus
75 067-75 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_958372575#Q5C06_RS05650Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0695153
Simplified PFAM architecture for RROC_0695153
PFAM domain coverage: 89 / 254 aa (35.0%)
1 aa254 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[154-242]
- Domain count: 1
- Matched identifier: RROC_0695153
- Positioned domains: LytTR 154-242
Cluster members and taxonomy
Representative gene: GCF_958372575#Q5C06_RS05650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key