1 HAMP#1
187-254 aa · 68 aa · 13.5% of protein
Raw token
HAMP:187:0.0000000000014:254:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS01845
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS01845Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 502 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 15.9% of protein
Raw token
His_kinase:285:1.88e-31:364:80:803 HATPase_c#3
383-492 aa · 110 aa · 21.9% of protein
Raw token
HATPase_c:383:7.05e-16:492:110:109- Raw architecture: HAMP:187:0.0000000000014:254:68:69#His_kinase:285:1.88e-31:364:80:80#HATPase_c:383:7.05e-16:492:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span413491-416575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_01845RefSeq proteinWP_118623491.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00006Context members
DWX61_RS01845DWX61_RS01850
Partner locus tags
DWX61_RS01845DWX61_RS01850
Partner old locus tags
DWX61_01845DWX61_01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118623491.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS01845Primary locus identifier stored in the genes table.
Old locus tagDWX61_01845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval413 491-414 999 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span413 491-416 575 ntGCF_003478985::NZ_QUGH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span413 491-416 575 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
413 491 nt416 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS01845GCF_003478985#DWX61_RS01845
HKClassicCurrent focus
413 491-414 999 nt · Forward (+)
DWX61_RS01850GCF_003478985#DWX61_RS01850
RRunclassified
414 977-416 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS01845The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464890
Simplified PFAM architecture for HKOC_1464890
PFAM domain coverage: 231 / 502 aa (46.0%)
1 aa502 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[209-254] | His_kinase[285-361] | HATPase_c[384-491]
- Domain count: 3
- Matched identifier: HKOC_1464890
- Positioned domains: HAMP 209-254 ; His_kinase 285-361 ; HATPase_c 384-491
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS01845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key