1 Response_reg#1
4-121 aa · 118 aa · 23.6% of protein
Raw token
Response_reg:4:2.06e-27:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS00720
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS00720Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 500 aa (38.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
401-442 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:401:0.000000858:442:42:423 HTH_AraC#3
461-491 aa · 31 aa · 6.2% of protein
Raw token
HTH_AraC:461:0.000000643:491:31:42- Raw architecture: Response_reg:4:2.06e-27:121:118:111#HTH_AraC:401:0.000000858:442:42:42#HTH_AraC:461:0.000000643:491:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span169727-172898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_00720RefSeq proteinWP_118623282.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00004Context members
DWX61_RS00715DWX61_RS00720
Partner locus tags
DWX61_RS00715DWX61_RS00720
Partner old locus tags
DWX61_00715DWX61_00720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118623282.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS00720Primary locus identifier stored in the genes table.
Old locus tagDWX61_00720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval171 396-172 898 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span169 727-172 898 ntGCF_003478985::NZ_QUGH01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span169 727-172 898 nt3 172 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 727 nt172 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS00715GCF_003478985#DWX61_RS00715
HKClassic
169 727-171 418 nt · Forward (+)
DWX61_RS00720GCF_003478985#DWX61_RS00720
RRunclassifiedCurrent focus
171 396-172 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS00720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158300
Simplified PFAM architecture for RROC_0158300
PFAM domain coverage: 193 / 500 aa (38.6%)
1 aa500 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[415-493]
- Domain count: 2
- Matched identifier: RROC_0158300
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 415-493 ; HTH_18 415-493
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS00720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key