1 HAMP#1
255-325 aa · 71 aa · 12.6% of protein
Raw token
HAMP:255:0.000000631:325:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS00715
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength563 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS00715Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length563 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 563 aa (46.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa563 aa
Domain-by-domain annotation3 items
2 His_kinase#2
340-419 aa · 80 aa · 14.2% of protein
Raw token
His_kinase:340:3.96e-29:419:80:803 HATPase_c#3
438-547 aa · 110 aa · 19.5% of protein
Raw token
HATPase_c:438:0.00000029:547:110:109- Raw architecture: HAMP:255:0.000000631:325:71:69#His_kinase:340:3.96e-29:419:80:80#HATPase_c:438:0.00000029:547:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span169727-172898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_00715RefSeq proteinWP_182433920.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00004Context members
DWX61_RS00715DWX61_RS00720
Partner locus tags
DWX61_RS00715DWX61_RS00720
Partner old locus tags
DWX61_00715DWX61_00720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182433920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS00715Primary locus identifier stored in the genes table.
Old locus tagDWX61_00715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval169 727-171 418 nt1 692 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span169 727-172 898 ntGCF_003478985::NZ_QUGH01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span169 727-172 898 nt3 172 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 727 nt172 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS00715GCF_003478985#DWX61_RS00715
HKClassicCurrent focus
169 727-171 418 nt · Forward (+)
DWX61_RS00720GCF_003478985#DWX61_RS00720
RRunclassified
171 396-172 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS00715The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1245718
Simplified PFAM architecture for HKOC_1245718
PFAM domain coverage: 233 / 563 aa (41.4%)
1 aa563 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[272-324] | His_kinase[340-419] | HATPase_c[435-534]
- Domain count: 3
- Matched identifier: HKOC_1245718
- Positioned domains: HAMP 272-324 ; His_kinase 340-419 ; HATPase_c 435-534
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS00715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key