1 sCache_like#1
40-131 aa · 92 aa · 16.4% of protein
Raw token
sCache_like:40:0.000000179:131:99:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS00325
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478985#DWX61_RS00325Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage268 / 560 aa (47.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-397 aa · 66 aa · 11.8% of protein
Raw token
HisKA:332:1.35e-18:397:66:643 HATPase_c#3
441-550 aa · 110 aa · 19.6% of protein
Raw token
HATPase_c:441:1.08e-31:550:110:109- Raw architecture: sCache_like:40:0.000000179:131:99:114#HisKA:332:1.35e-18:397:66:64#HATPase_c:441:1.08e-31:550:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478985::NZ_QUGH01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span76615-78297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_00325RefSeq proteinWP_330673244.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00003Context members
DWX61_RS00325
Partner locus tags
DWX61_RS00325
Partner old locus tags
DWX61_00325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330673244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS00325Primary locus identifier stored in the genes table.
Old locus tagDWX61_00325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval76 615-78 297 nt1 683 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 615-78 297 ntGCF_003478985::NZ_QUGH01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span76 615-78 297 nt1 683 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 615 nt78 297 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX61_RS00325GCF_003478985#DWX61_RS00325
HKClassicCurrent focus
76 615-78 297 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS00325The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1258728
Simplified PFAM architecture for HKOC_1258728
PFAM domain coverage: 174 / 560 aa (31.1%)
1 aa560 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[332-397] | HATPase_c[444-551]
- Domain count: 2
- Matched identifier: HKOC_1258728
- Positioned domains: HisKA 332-397 ; HATPase_c 444-551
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key