1 Response_reg#1
6-115 aa · 110 aa · 20.6% of protein
Raw token
Response_reg:6:5.66e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS00155
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS00155Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 535 aa (33.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-472 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:436:0.00000413:472:37:423 HTH_AraC#3
489-520 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:489:0.000000203:520:32:42- Raw architecture: Response_reg:6:5.66e-23:115:111:111#HTH_AraC:436:0.00000413:472:37:42#HTH_AraC:489:0.000000203:520:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33557-36973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_00155RefSeq proteinWP_182433919.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00001Context members
DWX61_RS00155DWX61_RS00160
Partner locus tags
DWX61_RS00155DWX61_RS00160
Partner old locus tags
DWX61_00155DWX61_00160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182433919.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS00155Primary locus identifier stored in the genes table.
Old locus tagDWX61_00155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval33 557-35 164 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 557-36 973 ntGCF_003478985::NZ_QUGH01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span33 557-36 973 nt3 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 557 nt36 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS00155GCF_003478985#DWX61_RS00155
RRunclassifiedCurrent focus
33 557-35 164 nt · Reverse (-)
DWX61_RS00160GCF_003478985#DWX61_RS00160
HKClassic
35 183-36 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS00155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101065
Simplified PFAM architecture for RROC_0101065
PFAM domain coverage: 187 / 535 aa (35.0%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-114] | HTH_18[444-520]
- Domain count: 2
- Matched identifier: RROC_0101065
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; HTH_18 444-520 ; HTH_18 444-520
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS00155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key