1 HAMP#1
179-249 aa · 71 aa · 14.7% of protein
Raw token
HAMP:179:1.78e-16:249:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS11600
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS11600Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 483 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.5% of protein
Raw token
HisKA:255:1.21e-16:319:65:643 HATPase_c#3
364-475 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:364:2.39e-31:475:113:109- Raw architecture: HAMP:179:1.78e-16:249:71:69#HisKA:255:1.21e-16:319:65:64#HATPase_c:364:2.39e-31:475:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000008.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116186-118321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_11595RefSeq proteinWP_118360840.1
Context group ID
GCF_003474415::NZ_QUDG01000008.1::G00034Context members
DW088_RS11600DW088_RS11605
Partner locus tags
DW088_RS11600DW088_RS11605
Partner old locus tags
DW088_11595DW088_11600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360840.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS11600Primary locus identifier stored in the genes table.
Old locus tagDW088_11595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000008.1Sequence record reported by the local genomic context database.
Genomic interval116 186-117 637 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 186-118 321 ntGCF_003474415::NZ_QUDG01000008.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000008.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span116 186-118 321 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 186 nt118 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS11600GCF_003474415#DW088_RS11600
HKClassicCurrent focus
116 186-117 637 nt · Reverse (-)
DW088_RS11605GCF_003474415#DW088_RS11605
RROmpR
117 641-118 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS11600The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1595978
Simplified PFAM architecture for HKOC_1595978
PFAM domain coverage: 227 / 483 aa (47.0%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-247] | HisKA[255-319] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1595978
- Positioned domains: HAMP 197-247 ; HisKA 255-319 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS11600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key