1 HisKA#1
341-407 aa · 67 aa · 9.3% of protein
Raw token
HisKA:341:0.0000000000000125:407:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS00905
Histidine kinase, Hybrid
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeHybridLength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS00905Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 721 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-572 aa · 119 aa · 16.5% of protein
Raw token
HATPase_c:454:5.35e-27:572:119:1093 Response_reg#3
596-713 aa · 118 aa · 16.4% of protein
Raw token
Response_reg:596:1.86e-23:713:118:111- Raw architecture: HisKA:341:0.0000000000000125:407:67:64#HATPase_c:454:5.35e-27:572:119:109#Response_reg:596:1.86e-23:713:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span156788-158953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_00905RefSeq proteinWP_118358767.1
Context group ID
GCF_003474415::NZ_QUDG01000001.1::G00003Context members
DW088_RS00905
Partner locus tags
DW088_RS00905
Partner old locus tags
DW088_00905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118358767.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS00905Primary locus identifier stored in the genes table.
Old locus tagDW088_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000001.1Sequence record reported by the local genomic context database.
Genomic interval156 788-158 953 nt2 166 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 788-158 953 ntGCF_003474415::NZ_QUDG01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span156 788-158 953 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 788 nt158 953 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS00905GCF_003474415#DW088_RS00905
HKHybridCurrent focus
156 788-158 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS00905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730892
Simplified PFAM architecture for HKOC_0730892
PFAM domain coverage: 300 / 721 aa (41.6%)
1 aa721 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-407] | HATPase_c[455-570] | Response_reg[596-712]
- Domain count: 3
- Matched identifier: HKOC_0730892
- Positioned domains: HisKA 341-407 ; HATPase_c 455-570 ; Response_reg 596-712
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key