1 Response_reg#1
6-115 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:6:1.04e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS07840
Response regulator OmpR family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS07840Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:147:5.36e-18:221:76:77- Raw architecture: Response_reg:6:1.04e-32:115:111:111#Trans_reg_C:147:5.36e-18:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000004.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108147-110745Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_07835RefSeq proteinWP_158574639.1
Context group ID
GCF_003474415::NZ_QUDG01000004.1::G00018Context members
DW088_RS07835DW088_RS07840
Partner locus tags
DW088_RS07835DW088_RS07840
Partner old locus tags
DW088_07830DW088_07835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158574639.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS07840Primary locus identifier stored in the genes table.
Old locus tagDW088_07835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000004.1Sequence record reported by the local genomic context database.
Genomic interval110 071-110 745 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 147-110 745 ntGCF_003474415::NZ_QUDG01000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span108 147-110 745 nt2 599 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 147 nt110 745 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS07835GCF_003474415#DW088_RS07835
HKClassic
108 147-110 081 nt · Forward (+)
DW088_RS07840GCF_003474415#DW088_RS07840
RROmpRCurrent focus
110 071-110 745 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS07840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543442
Simplified PFAM architecture for RROC_1543442
PFAM domain coverage: 184 / 224 aa (82.1%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1543442
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key