1 HAMP#1
272-338 aa · 67 aa · 11.8% of protein
Raw token
HAMP:272:0.00000000000447:338:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS07525
Histidine kinase, Classic
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassHKTypeClassicLength566 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474415#DW088_RS07525Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length566 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 566 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa566 aa
Domain-by-domain annotation3 items
2 His_kinase#2
355-435 aa · 81 aa · 14.3% of protein
Raw token
His_kinase:355:3.9e-25:435:81:803 HATPase_c#3
456-553 aa · 98 aa · 17.3% of protein
Raw token
HATPase_c:456:0.00000000000233:553:105:109- Raw architecture: HAMP:272:0.00000000000447:338:67:69#His_kinase:355:3.9e-25:435:81:80#HATPase_c:456:0.00000000000233:553:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474415::NZ_QUDG01000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30080-33366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_07520RefSeq proteinWP_118360262.1
Context group ID
GCF_003474415::NZ_QUDG01000004.1::G00016Context members
DW088_RS07520DW088_RS07525
Partner locus tags
DW088_RS07520DW088_RS07525
Partner old locus tags
DW088_07515DW088_07520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118360262.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS07525Primary locus identifier stored in the genes table.
Old locus tagDW088_07520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000004.1Sequence record reported by the local genomic context database.
Genomic interval31 666-33 366 nt1 701 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 080-33 366 ntGCF_003474415::NZ_QUDG01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span30 080-33 366 nt3 287 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 080 nt33 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW088_RS07520GCF_003474415#DW088_RS07520
RRunclassified
30 080-31 672 nt · Reverse (-)
DW088_RS07525GCF_003474415#DW088_RS07525
HKClassicCurrent focus
31 666-33 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS07525The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1230513
Simplified PFAM architecture for HKOC_1230513
PFAM domain coverage: 228 / 566 aa (40.3%)
1 aa566 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[293-339] | His_kinase[355-435] | HATPase_c[455-554]
- Domain count: 3
- Matched identifier: HKOC_1230513
- Positioned domains: HAMP 293-339 ; His_kinase 355-435 ; HATPase_c 455-554
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS07525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key