1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.0000000000136:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS08275
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS08275Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 440 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-296 aa · 66 aa · 15.0% of protein
Raw token
HisKA:231:0.00000161:296:66:643 HATPase_c#3
340-428 aa · 89 aa · 20.2% of protein
Raw token
HATPase_c:340:0.000000000000174:428:96:109- Raw architecture: HAMP:144:0.0000000000136:211:68:69#HisKA:231:0.00000161:296:66:64#HATPase_c:340:0.000000000000174:428:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000017.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20501-22476Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_08280RefSeq proteinWP_118101217.1
Context group ID
GCF_003470165::NZ_QSLI01000017.1::G00003Context members
DW688_RS08270DW688_RS08275
Partner locus tags
DW688_RS08270DW688_RS08275
Partner old locus tags
DW688_08275DW688_08280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118101217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS08275Primary locus identifier stored in the genes table.
Old locus tagDW688_08280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000017.1Sequence record reported by the local genomic context database.
Genomic interval21 154-22 476 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 501-22 476 ntGCF_003470165::NZ_QSLI01000017.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000017.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000017.1All displayed genes belong to this local TCS context.
Neighborhood span20 501-22 476 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 501 nt22 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS08270GCF_003470165#DW688_RS08270
RROmpR
20 501-21 157 nt · Forward (+)
DW688_RS08275GCF_003470165#DW688_RS08275
HKClassicCurrent focus
21 154-22 476 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS08275The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074133
Simplified PFAM architecture for HKOC_2074133
PFAM domain coverage: 200 / 440 aa (45.5%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-211] | HisKA[232-295] | HATPase_c[341-426]
- Domain count: 3
- Matched identifier: HKOC_2074133
- Positioned domains: HAMP 162-211 ; HisKA 232-295 ; HATPase_c 341-426
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS08275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key