1 Response_reg#1
3-113 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:3:4.45e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS00140
Response regulator OmpR family
Streptococcus lutetiensis · GCF_003470165
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS00140Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 226 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-210 aa · 66 aa · 29.2% of protein
Raw token
Trans_reg_C:145:0.00000000000000297:210:66:77- Raw architecture: Response_reg:3:4.45e-37:113:111:111#Trans_reg_C:145:0.00000000000000297:210:66:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24142-26057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_00140RefSeq proteinWP_020916921.1
Context group ID
GCF_003470165::NZ_QSLI01000001.1::G00001Context members
DW688_RS00135DW688_RS00140
Partner locus tags
DW688_RS00135DW688_RS00140
Partner old locus tags
DW688_00135DW688_00140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020916921.1Primary protein accession used for annex mappings.
UniProt accessionA0AB38G7R4Primary UniProt accession resolved in the annex database.
UniProt IDA0AB38G7R4_9STREDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS00140Primary locus identifier stored in the genes table.
Old locus tagDW688_00140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000001.1Sequence record reported by the local genomic context database.
Genomic interval25 377-26 057 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 142-26 057 ntGCF_003470165::NZ_QSLI01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 142-26 057 nt1 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 142 nt26 057 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS00135GCF_003470165#DW688_RS00135
HKClassic
24 142-25 368 nt · Reverse (-)
DW688_RS00140GCF_003470165#DW688_RS00140
RROmpRCurrent focus
25 377-26 057 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000441535#KE3_RS05750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410949
Simplified PFAM architecture for RROC_1410949
PFAM domain coverage: 173 / 226 aa (76.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-208]
- Domain count: 2
- Matched identifier: RROC_1410949
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-208 ; Trans_reg_C 146-208
Cluster members and taxonomy
Representative gene: GCF_000441535#KE3_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key