1 HisKA#1
194-256 aa · 63 aa · 15.4% of protein
Raw token
HisKA:194:0.000000000178:256:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS00135
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength408 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS00135Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length408 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 408 aa (41.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa408 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-408 aa · 107 aa · 26.2% of protein
Raw token
HATPase_c:302:0.000000000864:408:113:109- Raw architecture: HisKA:194:0.000000000178:256:64:64#HATPase_c:302:0.000000000864:408:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24142-26057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_00135RefSeq proteinWP_020916920.1
Context group ID
GCF_003470165::NZ_QSLI01000001.1::G00001Context members
DW688_RS00135DW688_RS00140
Partner locus tags
DW688_RS00135DW688_RS00140
Partner old locus tags
DW688_00135DW688_00140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020916920.1Primary protein accession used for annex mappings.
UniProt accessionA0AB38G5Q1Primary UniProt accession resolved in the annex database.
UniProt IDA0AB38G5Q1_9STREDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS00135Primary locus identifier stored in the genes table.
Old locus tagDW688_00135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000001.1Sequence record reported by the local genomic context database.
Genomic interval24 142-25 368 nt1 227 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 142-26 057 ntGCF_003470165::NZ_QSLI01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 142-26 057 nt1 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 142 nt26 057 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS00135GCF_003470165#DW688_RS00135
HKClassicCurrent focus
24 142-25 368 nt · Reverse (-)
DW688_RS00140GCF_003470165#DW688_RS00140
RROmpR
25 377-26 057 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000441535#KE3_RS05745Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2371540
Simplified PFAM architecture for HKOC_2371540
PFAM domain coverage: 162 / 408 aa (39.7%)
1 aa408 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[195-255] | HATPase_c[302-402]
- Domain count: 2
- Matched identifier: HKOC_2371540
- Positioned domains: HisKA 195-255 ; HATPase_c 302-402
Cluster members and taxonomy
Representative gene: GCF_000441535#KE3_RS05745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key