1 HisKA#1
217-284 aa · 68 aa · 15.4% of protein
Raw token
HisKA:217:0.000000000034:284:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS07935
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS07935Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 442 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
327-435 aa · 109 aa · 24.7% of protein
Raw token
HATPase_c:327:4.63e-28:435:109:109- Raw architecture: HisKA:217:0.000000000034:284:68:64#HATPase_c:327:4.63e-28:435:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000015.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33800-35792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_07940RefSeq proteinWP_020916819.1
Context group ID
GCF_003470165::NZ_QSLI01000015.1::G00002Context members
DW688_RS07930DW688_RS07935
Partner locus tags
DW688_RS07930DW688_RS07935
Partner old locus tags
DW688_07935DW688_07940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020916819.1Primary protein accession used for annex mappings.
UniProt accessionA0AB33ALY3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB33ALY3_9STREDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS07935Primary locus identifier stored in the genes table.
Old locus tagDW688_07940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000015.1Sequence record reported by the local genomic context database.
Genomic interval34 464-35 792 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 800-35 792 ntGCF_003470165::NZ_QSLI01000015.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000015.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000015.1All displayed genes belong to this local TCS context.
Neighborhood span33 800-35 792 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 800 nt35 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS07930GCF_003470165#DW688_RS07930
RROmpR
33 800-34 474 nt · Forward (+)
DW688_RS07935GCF_003470165#DW688_RS07935
HKClassicCurrent focus
34 464-35 792 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000441535#KE3_RS05160Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2051906
Simplified PFAM architecture for HKOC_2051906
PFAM domain coverage: 176 / 442 aa (39.8%)
1 aa442 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[218-284] | HATPase_c[328-436]
- Domain count: 2
- Matched identifier: HKOC_2051906
- Positioned domains: HisKA 218-284 ; HATPase_c 328-436
Cluster members and taxonomy
Representative gene: GCF_000441535#KE3_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key