1 HAMP#1
186-256 aa · 71 aa · 14.5% of protein
Raw token
HAMP:186:0.00000694:256:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS06135
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS06135Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 489 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-326 aa · 66 aa · 13.5% of protein
Raw token
HisKA:261:1.35e-16:326:66:643 HATPase_c#3
376-484 aa · 109 aa · 22.3% of protein
Raw token
HATPase_c:376:1.65e-26:484:109:109- Raw architecture: HAMP:186:0.00000694:256:71:69#HisKA:261:1.35e-16:326:66:64#HATPase_c:376:1.65e-26:484:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000009.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5686-7847Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_06135RefSeq proteinWP_118101090.1
Context group ID
GCF_003470165::NZ_QSLI01000009.1::G00017Context members
DW688_RS06130DW688_RS06135
Partner locus tags
DW688_RS06130DW688_RS06135
Partner old locus tags
DW688_06130DW688_06135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118101090.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS06135Primary locus identifier stored in the genes table.
Old locus tagDW688_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000009.1Sequence record reported by the local genomic context database.
Genomic interval6 378-7 847 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 686-7 847 ntGCF_003470165::NZ_QSLI01000009.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000009.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000009.1All displayed genes belong to this local TCS context.
Neighborhood span5 686-7 847 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 686 nt7 847 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS06130GCF_003470165#DW688_RS06130
RROmpR
5 686-6 378 nt · Forward (+)
DW688_RS06135GCF_003470165#DW688_RS06135
HKClassicCurrent focus
6 378-7 847 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS06135The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1543169
Simplified PFAM architecture for HKOC_1543169
PFAM domain coverage: 372 / 489 aa (76.1%)
1 aa489 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[36-179] | HAMP[204-256] | HisKA[262-326] | HATPase_c[376-485]
- Domain count: 4
- Matched identifier: HKOC_1543169
- Positioned domains: ArlS_N 36-179 ; HAMP 204-256 ; HisKA 262-326 ; HATPase_c 376-485
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS06135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key