1 HisKA#1
89-152 aa · 64 aa · 20.8% of protein
Raw token
HisKA:89:0.000000000583:152:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS05965
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS05965Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 307 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-306 aa · 108 aa · 35.2% of protein
Raw token
HATPase_c:199:9.36e-28:306:108:109- Raw architecture: HisKA:89:0.000000000583:152:64:64#HATPase_c:199:9.36e-28:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000008.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62542-64165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_05965RefSeq proteinWP_005933807.1
Context group ID
GCF_003470165::NZ_QSLI01000008.1::G00015Context members
DW688_RS05965DW688_RS05970
Partner locus tags
DW688_RS05965DW688_RS05970
Partner old locus tags
DW688_05965DW688_05970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005933807.1Primary protein accession used for annex mappings.
UniProt accessionC7H740Primary UniProt accession resolved in the annex database.
UniProt IDC7H740_FAED2Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS05965Primary locus identifier stored in the genes table.
Old locus tagDW688_05965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000008.1Sequence record reported by the local genomic context database.
Genomic interval62 542-63 465 nt924 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 542-64 165 ntGCF_003470165::NZ_QSLI01000008.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000008.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span62 542-64 165 nt1 624 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 542 nt64 165 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS05965GCF_003470165#DW688_RS05965
HKClassicCurrent focus
62 542-63 465 nt · Reverse (-)
DW688_RS05970GCF_003470165#DW688_RS05970
RROmpR
63 467-64 165 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS08890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2880544
Simplified PFAM architecture for HKOC_2880544
PFAM domain coverage: 171 / 307 aa (55.7%)
1 aa307 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-152] | HATPase_c[200-306]
- Domain count: 2
- Matched identifier: HKOC_2880544
- Positioned domains: HisKA 89-152 ; HATPase_c 200-306
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS08890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key