1 HisKA#1
173-231 aa · 59 aa · 15.3% of protein
Raw token
HisKA:173:0.00000000000000168:231:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS05775
Histidine kinase, Classic
Streptococcus lutetiensis · GCF_003470165
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS05775Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 386 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-386 aa · 110 aa · 28.5% of protein
Raw token
HATPase_c:277:7.33e-23:386:111:109- Raw architecture: HisKA:173:0.00000000000000168:231:60:64#HATPase_c:277:7.33e-23:386:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000008.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24071-25914Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_05775RefSeq proteinWP_182323630.1
Context group ID
GCF_003470165::NZ_QSLI01000008.1::G00014Context members
DW688_RS05770DW688_RS05775
Partner locus tags
DW688_RS05770DW688_RS05775
Partner old locus tags
DW688_05770DW688_05775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182323630.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS05775Primary locus identifier stored in the genes table.
Old locus tagDW688_05775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000008.1Sequence record reported by the local genomic context database.
Genomic interval24 754-25 914 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 071-25 914 ntGCF_003470165::NZ_QSLI01000008.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000008.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span24 071-25 914 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 071 nt25 914 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS05770GCF_003470165#DW688_RS05770
RROmpR
24 071-24 760 nt · Forward (+)
DW688_RS05775GCF_003470165#DW688_RS05775
HKClassicCurrent focus
24 754-25 914 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS05775The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2559087
Simplified PFAM architecture for HKOC_2559087
PFAM domain coverage: 168 / 386 aa (43.5%)
1 aa386 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-231] | HATPase_c[278-385]
- Domain count: 2
- Matched identifier: HKOC_2559087
- Positioned domains: HisKA 172-231 ; HATPase_c 278-385
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS05775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key