1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:7.29e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS03635
Response regulator OmpR family
Streptococcus lutetiensis · GCF_003470165
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003470165#DW688_RS03635Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-226 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:152:2.61e-24:226:77:77- Raw architecture: Response_reg:4:7.29e-34:113:111:111#Trans_reg_C:152:2.61e-24:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003470165::NZ_QSLI01000004.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104773-106789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_03640RefSeq proteinWP_118100955.1
Context group ID
GCF_003470165::NZ_QSLI01000004.1::G00008Context members
DW688_RS03630DW688_RS03635
Partner locus tags
DW688_RS03630DW688_RS03635
Partner old locus tags
DW688_03635DW688_03640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118100955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS03635Primary locus identifier stored in the genes table.
Old locus tagDW688_03640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000004.1Sequence record reported by the local genomic context database.
Genomic interval106 103-106 789 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 773-106 789 ntGCF_003470165::NZ_QSLI01000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 773-106 789 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 773 nt106 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW688_RS03630GCF_003470165#DW688_RS03630
HKClassic
104 773-106 110 nt · Reverse (-)
DW688_RS03635GCF_003470165#DW688_RS03635
RROmpRCurrent focus
106 103-106 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS03635The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314957
Simplified PFAM architecture for RROC_1314957
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1314957
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS03635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key