1 Response_reg#1
6-113 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:6:1.81e-20:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW688_RS03560
Response regulator OmpR family
Streptococcus lutetiensis · GCF_003470165
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003470165#DW688_RS03560Stable P2CS identifier used across views.
GenomeGCF_003470165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.86e-27:219:76:77- Raw architecture: Response_reg:6:1.81e-20:113:110:111#Trans_reg_C:146:1.86e-27:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003470165::NZ_QSLI01000004.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span90156-90818Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW688_03565RefSeq proteinWP_118100948.1
Context group ID
GCF_003470165::NZ_QSLI01000004.1::G00007Context members
DW688_RS03560
Partner locus tags
DW688_RS03560
Partner old locus tags
DW688_03565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118100948.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW688_RS03560Primary locus identifier stored in the genes table.
Old locus tagDW688_03565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSLI01000004.1Sequence record reported by the local genomic context database.
Genomic interval90 156-90 818 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 156-90 818 ntGCF_003470165::NZ_QSLI01000004.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003470165::NZ_QSLI01000004.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSLI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span90 156-90 818 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 156 nt90 818 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW688_RS03560GCF_003470165#DW688_RS03560
RROmpRCurrent focus
90 156-90 818 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470165#DW688_RS03560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732461
Simplified PFAM architecture for RROC_1732461
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1732461
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_003470165#DW688_RS03560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 150 055 · GCF_003470165
AssemblyASM347016v1 · Scaffoldhaploid
Genome composition1 887 340 bp · 37,5% GCStreptococcus lutetiensis
Signal transduction countsGenes 33 · HK 17 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key