1 HisKA#1
363-430 aa · 68 aa · 11.5% of protein
Raw token
HisKA:363:0.00000000000932:430:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS10310
Histidine kinase, Classic
Blautia obeum · GCF_003469845
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS10310Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 590 aa (30.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
473-585 aa · 113 aa · 19.2% of protein
Raw token
HATPase_c:473:1.15e-29:585:113:109- Raw architecture: HisKA:363:0.00000000000932:430:68:64#HATPase_c:473:1.15e-29:585:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000007.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175602-178068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_10330RefSeq proteinWP_118041143.1
Context group ID
GCF_003469845::NZ_QSKF01000007.1::G00050Context members
DW740_RS10310DW740_RS10315
Partner locus tags
DW740_RS10310DW740_RS10315
Partner old locus tags
DW740_10330DW740_10335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118041143.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J5E2Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J5E2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS10310Primary locus identifier stored in the genes table.
Old locus tagDW740_10330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000007.1Sequence record reported by the local genomic context database.
Genomic interval175 602-177 374 nt1 773 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 602-178 068 ntGCF_003469845::NZ_QSKF01000007.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000007.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000007.1All displayed genes belong to this local TCS context.
Neighborhood span175 602-178 068 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 602 nt178 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS10310GCF_003469845#DW740_RS10310
HKClassicCurrent focus
175 602-177 374 nt · Forward (+)
DW740_RS10315GCF_003469845#DW740_RS10315
RROmpR
177 367-178 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003469845#DW740_RS10310The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1111245
Simplified PFAM architecture for HKOC_1111245
PFAM domain coverage: 287 / 590 aa (48.6%)
1 aa590 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[92-199] | HisKA[363-430] | HATPase_c[474-584]
- Domain count: 3
- Matched identifier: HKOC_1111245
- Positioned domains: DUF4118 92-199 ; HisKA 363-430 ; HATPase_c 474-584
Cluster members and taxonomy
Representative gene: GCF_003469845#DW740_RS10310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key