1 Response_reg#1
5-118 aa · 114 aa · 44.9% of protein
Raw token
Response_reg:5:1.71e-31:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS10150
Response regulator, unclassified
Blautia obeum · GCF_003469845
ClassRRTypeunclassifiedLength254 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS10150Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 254 aa (75.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-195 aa · 41 aa · 16.1% of protein
Raw token
HTH_AraC:155:0.00000428:195:41:423 HTH_AraC#3
212-247 aa · 36 aa · 14.2% of protein
Raw token
HTH_AraC:212:0.0000000044:247:36:42- Raw architecture: Response_reg:5:1.71e-31:118:114:111#HTH_AraC:155:0.00000428:195:41:42#HTH_AraC:212:0.0000000044:247:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000007.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span147636-150232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_10170RefSeq proteinWP_118049307.1
Context group ID
GCF_003469845::NZ_QSKF01000007.1::G00048Context members
DW740_RS10150DW740_RS10155
Partner locus tags
DW740_RS10150DW740_RS10155
Partner old locus tags
DW740_10170DW740_10175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118049307.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J5B3Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J5B3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS10150Primary locus identifier stored in the genes table.
Old locus tagDW740_10170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000007.1Sequence record reported by the local genomic context database.
Genomic interval147 636-148 400 nt765 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span147 636-150 232 ntGCF_003469845::NZ_QSKF01000007.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000007.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000007.1All displayed genes belong to this local TCS context.
Neighborhood span147 636-150 232 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 636 nt150 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS10150GCF_003469845#DW740_RS10150
RRunclassifiedCurrent focus
147 636-148 400 nt · Reverse (-)
DW740_RS10155GCF_003469845#DW740_RS10155
HKClassic
148 397-150 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS09665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0689567
Simplified PFAM architecture for RROC_0689567
PFAM domain coverage: 193 / 254 aa (76.0%)
1 aa254 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[168-247]
- Domain count: 2
- Matched identifier: RROC_0689567
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 168-247 ; HTH_18 168-247
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS09665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key